YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13423063, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	40	0.94
Non-Cytoplasmic	41	46	0.65
Transmembrane Helix	47	65	0.91
Cytoplasmic	66	78	0.84
Transmembrane Helix	79	100	0.89
Non-Cytoplasmic	101	108	0.65
Transmembrane Helix	109	129	0.89
Cytoplasmic	130	137	0.75
Transmembrane Helix	138	160	0.86
Non-Cytoplasmic	161	179	0.76
Transmembrane Helix	180	199	0.88
Cytoplasmic	200	214	0.82
Transmembrane Helix	215	234	0.87
Non-Cytoplasmic	235	241	0.73
Transmembrane Helix	242	264	0.92
Cytoplasmic	265	286	0.84
Transmembrane Helix	287	312	0.81
Non-Cytoplasmic	313	337	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGGTRILSM GFKSLLDKLK IEPYVIALFG MVVLASVLPV RGAAAEGLSV IVKLAIALLF  60
   61 FLHGAKLSRE AVVAGVTHWR LHLTILAFTF VMFPVLGLVA SKLGVLSSTL AAGMLFLCCL 120
  121 PSTVQSSIAF TSIARGNVAA AVCAASASNL FGIFITPVLV SVLMHTQGGA AGGWESIQDI 180
  181 IVQLLLPFIL GQLARPLVAK WVEKHKQLVG YVDRGSILLV VYAAFSEAVV GGIWSKVSAL 240
  241 EMVVLLVACC ILLAIVLAAT TYGARALGFS KEDEITIMFC GSKKSMATGV PMAGILFPGP 300
  301 TAGVIVLPLM IFHQIQLMAC SVIAQHYAKR PSEIVEA