YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DHSD_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALWRLSVLC GAREGRALFL RTPVVRPALV SAFLQDRPAQ GWCGTQHIHL SPSHHSGSKA  60
   61 ASLHWTGERV VSVLLLGLIP AAYLNPCSAM DYSLAATLTL HSHWGIGQVV TDYVHGDAVQ 120
  121 KAAKTGLLVL SAFTFAGLCY FNYHDVGICK AVAMLWKL

Type	Start	End	Confidence
Cytoplasmic	1	69	0.64
Transmembrane Helix	70	84	0.56
Non-Cytoplasmic	85	124	0.73
Transmembrane Helix	125	144	0.61
Cytoplasmic	145	158	0.46