YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26991334, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIDLPLIWA VIIIFGVMMY VVMDGFDLGI GMLFPFVKGE QDRDVMMNTV APVWDGNETW  60
   61 LVLGGAGLFG AFPMAYAVVL EALYLPLILM LIGLIFRGVA FEFRFKAKAD KRHIWDKAFI 120
  121 WGSLIATFFQ GVALGAFLEG FKVVDRHFAG GTLDWLTPFS LFCGLGLIVA YTLLGCTWLI 180
  181 MKTEGPLQQK MHDMARPLAL VLLVVIGIVS LWTPIAYPQI ADRWFSMPNL IWFMPVPLLV 240
  241 LVTFYGLLKA VARNAHYTPF LLTLVLIFLG YSGLGISLWP NIIPPSISIW DAAAPPQSQG 300
  301 FMLVGTLFIL PFILMYTFWS YYVFRGKVTH EDGYH

Type	Start	End	Confidence
Cytoplasmic	1	6	0.54
Transmembrane Helix	7	28	0.88
Non-Cytoplasmic	29	73	0.56
Transmembrane Helix	74	101	0.80
Cytoplasmic	102	117	0.92
Transmembrane Helix	118	138	0.94
Non-Cytoplasmic	139	157	0.88
Transmembrane Helix	158	180	0.93
Cytoplasmic	181	197	0.89
Transmembrane Helix	198	216	0.96
Non-Cytoplasmic	217	229	0.78
Transmembrane Helix	230	248	0.96
Cytoplasmic	249	259	0.75
Transmembrane Helix	260	280	0.94
Non-Cytoplasmic	281	299	0.90
Transmembrane Helix	300	320	0.93
Cytoplasmic	321	335	0.90