YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26991325, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.89
Transmembrane Helix	10	29	0.95
Non-Cytoplasmic	30	34	0.85
Transmembrane Helix	35	56	0.90
Cytoplasmic	57	90	0.95
Transmembrane Helix	91	112	0.90
Non-Cytoplasmic	113	120	0.75
Transmembrane Helix	121	143	0.92
Cytoplasmic	144	162	0.95
Transmembrane Helix	163	186	0.93
Non-Cytoplasmic	187	193	0.85
Transmembrane Helix	194	215	0.91
Cytoplasmic	216	223	0.84
Transmembrane Helix	224	244	0.93
Non-Cytoplasmic	245	258	0.78
Transmembrane Helix	259	279	0.94
Cytoplasmic	280	286	0.88
Transmembrane Helix	287	306	0.94
Non-Cytoplasmic	307	326	0.89
Transmembrane Helix	327	348	0.93
Cytoplasmic	349	364	0.91
Transmembrane Helix	365	388	0.88
Non-Cytoplasmic	389	399	0.81
Transmembrane Helix	400	421	0.87
Cytoplasmic	422	436	0.90
Transmembrane Helix	437	457	0.89
Non-Cytoplasmic	458	466	0.82
Transmembrane Helix	467	489	0.88
Cytoplasmic	490	512	0.90
Transmembrane Helix	513	531	0.96
Non-Cytoplasmic	532	547	0.80
Transmembrane Helix	548	569	0.92
Cytoplasmic	570	576	0.89
Transmembrane Helix	577	599	0.93
Non-Cytoplasmic	600	644	0.96
Transmembrane Helix	645	668	0.87
Cytoplasmic	669	688	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNNNSLLRH IPWLALAVIG ACALGVVALR RGEAINALWI VVAAVAIYLV AYRYYSLFIA  60
   61 TKVMQLDPRR ATPAVLNNDG LDYVPTNKHI LFGHHFAAIA GAGPLVGPVL AAQMGYLPGT 120
  121 LWLIAGVVLA GAVQDFMVLF LSTRRNGRSL GDMVREEMGR IPGTIALFGC FLIMIIILAV 180
  181 LALIVVKALA ESPWGMFTVM ATIPIAMFMG IYMRYIRPGR IGEISVVGVV LLLASIWLGG 240
  241 VIAADPVWGP AFTFTGVQIT WMLVGYGFVA AVLPVWLVLA PRDYLSTFLK IGTILGLAIG 300
  301 ILIIAPELKM PALTQFTDGT GPVWKGTLFP FLFITIACGA VSGFHALISS GTTPKLLDNE 360
  361 TNARYIGYGG MLMESFVAIM AMVAASVIEP GVYFAMNSPA AVVGTDVASV AQTVSSWGFL 420
  421 ITPEQLEAVA RDIGEHTILA RAGGAPTLAV GIAQILHQVL PGENTMAFWY HFAILFEALF 480
  481 ILTAVDAGTR AGRFMLQDLL GSFVPALKRT ESWGANLLAT AGCVALWGYL LYQGVIDPLG 540
  541 GINTLWPLFG ISNQMLAGIA LMLGTVVLIK MKRQRYIWVT LLPAVWLLIC TTAAGLIKLF 600
  601 DPNPAVGFLA LAKKYSTALD AGQVLAPAKD IGQMQHVIFN AYTNAGLTIL FLLVVFSILF 660
  661 FAIKVGYAAL GRKERSDKET PFQALPDA