YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26991192, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.94
Transmembrane Helix	8	33	0.88
Non-Cytoplasmic	34	41	0.84
Transmembrane Helix	42	61	0.94
Cytoplasmic	62	73	0.88
Transmembrane Helix	74	95	0.91
Non-Cytoplasmic	96	134	0.92
Transmembrane Helix	135	159	0.88
Cytoplasmic	160	179	0.95
Transmembrane Helix	180	203	0.89
Non-Cytoplasmic	204	236	0.93
Transmembrane Helix	237	260	0.90
Cytoplasmic	261	272	0.92
Transmembrane Helix	273	293	0.93
Non-Cytoplasmic	294	332	0.83
Transmembrane Helix	333	355	0.87
Cytoplasmic	356	394	0.87
Transmembrane Helix	395	416	0.92
Non-Cytoplasmic	417	456	0.52
Transmembrane Helix	457	482	0.83
Cytoplasmic	483	484	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALPTLRIIG FIIGIFLITL AVSMAVPMAT LVIFERTGDM PSFLWSSLIT FIAGLALVVQ  60
   61 GRPEHVHLRP RDMYLLTVSS WLVVCVFAAL PFLLTQHISY TDAFFESMSG ITATGATVLS 120
  121 GLDNMSPGIL MWRSMLHWLG GIGFIAMAVA ILPLLRIGGM RLFQTESSDR SEKVMPRSHM 180
  181 VAKSIVGVYV GFSILGALAF WWAGMSPFDA INHAMSAIST GGFSTSDQSL AKWDIPAVHW 240
  241 VAVVVMIMGS LPFTLYVATL RGNRKALIRD QQVQGLLGML VVTWLVLGTW YWYSTNLHWL 300
  301 DALRHVALNV TSVVTTTGFS LGDYSLWGNF SLMLFFYLGF VGGCSGSTAG GIKIFRFQVA 360
  361 YILLKASLNQ LIHPRAVIKQ KYNGHRLDED IVRSILTFSF FFAITICVMA LLLSLLGVDW 420
  421 MTALTGAAGT VSGVGPGLGE VIGPSGNYAT LPDAAKWILA AGMLLGRLEI ITVLVLCMPA 480
  481 FWRH