YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26991157, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEVEVKKAQ ESLQDRLAQV VELLQRQRMV EDLTHRQEGA HNDLVENLVH RQNLVELQRK  60
   61 LDDLHPADIA YILEALPLED RLTVWQLVRS ERDGDILLEV SDSVRQSLIA DMDDHELLAA 120
  121 AKEMDADELA DLAPELPRDV VHELMETLDA QQRERVRSAL SYDEEQVGAL MDFEMVTIRE 180
  181 DVSLEVVLRY LRRLKELPNH TDKLFVVDYD GILKGVLPIK RLLVNDPEKK VAEVMATDPV 240
  241 SFQPEEDAYD AAQAFERYDL VSAPVVDKSE RLIGRLTIDE MVDLIREESE SEVLNMAGLR 300
  301 EEEDIFASVW RSFRNRWAWL AINLITAFVA SRVIGLFEGS IEKLVALAAL MPIVAGIGGN 360
  361 SGNQTITMIV RAMALDQVSP GNTSRLMRKE LAVSLINGLV WGGVIGAVAF WLYGSWSLGV 420
  421 VMTAAMTLNL LLAALMGVLI PMTLARLGRD PAMGASVMIT AVTDSGGFFI FLGLATLFLL 480
  481

Type	Start	End	Confidence
Cytoplasmic	1	316	0.96
Transmembrane Helix	317	336	0.95
Non-Cytoplasmic	337	343	0.81
Transmembrane Helix	344	366	0.83
Cytoplasmic	367	390	0.91
Transmembrane Helix	391	413	0.91
Non-Cytoplasmic	414	420	0.79
Transmembrane Helix	421	444	0.88
Cytoplasmic	445	454	0.82
Transmembrane Helix	455	478	0.89
Non-Cytoplasmic	479	480	0.86