YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26990975, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.90
Transmembrane Helix	34	55	0.88
Non-Cytoplasmic	56	66	0.68
Transmembrane Helix	67	87	0.90
Cytoplasmic	88	92	0.61
Transmembrane Helix	93	111	0.82
Non-Cytoplasmic	112	118	0.67
Transmembrane Helix	119	137	0.94
Cytoplasmic	138	150	0.82
Transmembrane Helix	151	173	0.86
Non-Cytoplasmic	174	185	0.79
Transmembrane Helix	186	205	0.88
Cytoplasmic	206	212	0.65
Transmembrane Helix	213	234	0.88
Non-Cytoplasmic	235	251	0.80
Transmembrane Helix	252	273	0.88
Cytoplasmic	274	306	0.87
Transmembrane Helix	307	324	0.59
Non-Cytoplasmic	325	335	0.42
Transmembrane Helix	336	356	0.89
Cytoplasmic	357	361	0.50
Transmembrane Helix	362	385	0.85
Non-Cytoplasmic	386	393	0.62
Transmembrane Helix	394	419	0.84
Cytoplasmic	420	430	0.54
Transmembrane Helix	431	448	0.88
Non-Cytoplasmic	449	449	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRKSEAPT LDLAPPLETS WLERIFKLKQ HGSTVRTEMI AGVTTFITMA YIIFVNPNIM  60
   61 ADAGIDHGAA FVATCIAAAL GCLLMGLYAN WPVGLAPGMG LNAFFTYTVV GTMGYNWETA 120
  121 LGAVFVSGVL FMFLTLSKVR EWLLNSIPVS LRHAMGAGVG LFLGLIGLKT AGIIVDSPAT 180
  181 LIKLGSLHEP GPLLAAVCFL LIAILSYKRV FGAILISIMG VTLAGWGLGL VKFGGVMSMP 240
  241 PSLAPTWMAM DVAGVFNVSM ISVVLAFLFV HMFDTAGTLM GVAQRANLVA PDGRIENLSK 300
  301 ALKADSASSV FGAVVGVPPV TSYVESAAGV AAGGRTGLTA VVVGLLFIAA MFFAPLAGMI 360
  361 PAYATAGALI YVAMLMMGSM AHIHWDEATD SIPAIVTVIM MPLTFSVADG IALGFISYVA 420
  421 LKAGTGKYKE ISASLWVLCA IFIAKFVFL