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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|26990269, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.63
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLRQLSIQW KITLLAGLCL AAIVTLLVGL SLYRMDHSSD LVKASSMQML TEAAQSRIES  60
   61 QGEVQALNIR RQFMDAYQYG AGFARQVLFL REQAEKRFLD AFDLREDMTR QVRAALQANP 120
  121 DLLGLSLVFE PNALDNKDSL FAGKAELGSN ETGRFALYWS QPRAGQLTSM ALPEHDMANT 180
  181 EIGPSGQPAN TWWVCPRTSG KVCVVEPYFY DIDGQQVLMT SIVFPLAVNG KIIATLSIDI 240
  241 NLNSLQALSQ EASRSLYEGR TTVGILTPVG LLAGYSADAS KLAQRFDQVD PTKGAELVRK 300
  301 LADGKLTTLH DRQRLKVLAA FRPIPDAQPW GVLLDVPENA LTGPAETLKQ ELDALNTSGT 360
  361 LLELSLGLAA AIVGLLLVWL MARGVTRPIL GVAAMLKDIA SGEGDLTRRL TYQKQDELGE 420
  421 LAGWFNRFLD KLQPTIAEVK RSVQAARGTA DQSSAIATET SAGMEQQYRQ VDQVATASHE 480
  481 MSATAQDVAR SAAQAAQAAR DADQATREGL AVIDRTTSSI GALAANMSDT MAEIEGLAQN 540
  541 SEKIGSVLEV IRSIAEQTNL LALNAAIEAA RAGEAGRGFA VVADEVRNLA QRTQESVEET 600
  601 RQVIEALQNG TREVVGAMDH SHRQAQGGVE QVGQAVTALQ RIGQAVTVIT DMNLQIASAA 660
  661 EEQSAVAEEI NSNVATIRDV TESLSGQANE SARVSQSLNS LANQQQALMD QFRV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle