YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26988954, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.64
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	17	0.64
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	75	0.58
Transmembrane Helix	76	98	0.91
Cytoplasmic	99	105	0.67
Transmembrane Helix	106	127	0.87
Non-Cytoplasmic	128	131	0.57
Transmembrane Helix	132	152	0.85
Cytoplasmic	153	159	0.64
Transmembrane Helix	160	184	0.89
Non-Cytoplasmic	185	202	0.61
Transmembrane Helix	203	222	0.83
Cytoplasmic	223	239	0.42
Transmembrane Helix	240	261	0.75
Non-Cytoplasmic	262	269	0.51
Transmembrane Helix	270	291	0.94
Cytoplasmic	292	297	0.52
Transmembrane Helix	298	322	0.72
Non-Cytoplasmic	323	323	0.30
Transmembrane Helix	324	346	0.60
Cytoplasmic	347	363	0.82
Transmembrane Helix	364	385	0.90
Non-Cytoplasmic	386	404	0.84
Transmembrane Helix	405	427	0.83
Cytoplasmic	428	458	0.91
Transmembrane Helix	459	483	0.89
Non-Cytoplasmic	484	501	0.87
Transmembrane Helix	502	523	0.94
Cytoplasmic	524	572	0.96
Transmembrane Helix	573	594	0.89
Non-Cytoplasmic	595	601	0.90
Transmembrane Helix	602	624	0.89
Cytoplasmic	625	630	0.88
Transmembrane Helix	631	651	0.95
Non-Cytoplasmic	652	656	0.79
Transmembrane Helix	657	679	0.90
Cytoplasmic	680	699	0.98
Transmembrane Helix	700	722	0.91
Non-Cytoplasmic	723	758	0.96
Transmembrane Helix	759	777	0.96
Cytoplasmic	778	816	0.94
Transmembrane Helix	817	840	0.83
Non-Cytoplasmic	841	848	0.80
Transmembrane Helix	849	868	0.94
Cytoplasmic	869	883	0.84
Transmembrane Helix	884	907	0.89
Non-Cytoplasmic	908	926	0.90
Transmembrane Helix	927	949	0.90
Cytoplasmic	950	971	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIVLLLLP FVGSCLAAVL PHNARNAESI LAGLVALVGT VQVALLYPQV AHGGVIREEF  60
   61 LWLPSLGMNL VLRMDGFAWL FSLLVLGIGA LVSLYARYYM SPQDPVPRFF AFFLAFMGAM 120
  121 LGLVISGNLI QLVFFWELTS LFSFLLIGYW HHRADARRGA YMALMVTGAG GLCLLVGALL 180
  181 LGHVVGSYDL DKVLAAGHII RQHALYPVLL PLILIGALTK SAQFPFQFWL PHAMAAPTPV 240
  241 SAYLHSATMV KAGVFLLARL WPVLSGSEEW FWIVGGAGAL TLLLGAFAAM FQNDLKGLLA 300
  301 YSTISHLGLI TLLLGLNSPL AAVAAVFHIL NHATFKASLF MAAGIIDHES GTRDIRRLSG 360
  361 LIRLVPYTAT LAMVASASMA GVPLMNGFLS KEMFFAETVF ISSTAWVEAT LPVIATLAGT 420
  421 FSVAYALRFT VDVFFGPTAQ DLPHTPHEPP RWMRAPVELL VLTCLVVGIF PTQSVGPLLA 480
  481 AAALPVVGGT LPEYSLAIWH GWNAPMIMSL VAMSGGIVLY LLLRKQLRLG RFPYPPVIER 540
  541 FNGKRLFEHG QVHLMLLARR IERVLTTRRL QSQLFMLVFA AFLAGLTPML YSGLSWGDRP 600
  601 KIPGSGVFVA LWLIAIACAI GAAYQAKYHR LAALIMVSVC GLMTCITFVW FSAPDLALTQ 660
  661 LVVEVVTTVL ILLGLRWLPR RIEGVSPLPG SLERARLRRL RDLLLAVLVG GGMAVLSYAM 720
  721 LTRPTPNDIS SFYLSRALPQ GGGTNVVNVM LVDFRGFDTL GEITVLVAVA LTVFALLRRF 780
  781 RPPKESMQLP AQQRQLAPDV VTDLINPRHA TDTALGFMMV PAALVRLLLP IALLVSMYLF 840
  841 MRGHNQPGGG FVAGLVMSVA FILQYMVAGT QWVEAQMSLR PLRWMGTGLL CATLTGVGAM 900
  901 LLGYPFLTTH TAHLHLPLLG DVHVASALFF DIGVYTVVVG STLLILTALA HQSVRAYRPG 960
  961 NPAKTSQAGA A