YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26988702, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAGGGHRAP AMARTSLVDG PCAAVKFVYI SGTIVPMPAQ LKRRLTLFFA LVAIIALAFL  60
   61 GHWYFKGRFY ESTDNAYVQG EITRISSQLG ARIETVPVED NQHVSKGDLL VRLEAADFEL 120
  121 AVERARAALA TREAEYAQAQ SRLTQQGSLI AAGQAQLAAT QATFDRSRLD LSRAEKLRKP 180
  181 GFVSEERVTT LSADSHVAGS QVDKARADLQ SQRQQVTALN AELKRLDAQI ANARTDLAQA 240
  241 ELNLTRCEIH APISGTIGQR NARNGQVVQA GAYLLSIVPD EDIWVQANFK ETQIGRMHPG 300
  301 QRAELLFDSY PDTPIEGRVD SLFAASGAQF SLLPPDNATG NFTKVVQRIP IKLTFHADNP 360
  361 LHGRIRPGMS VTATVDLRSE DEGHNGR

Type	Start	End	Confidence
Cytoplasmic	1	44	0.82
Transmembrane Helix	45	65	0.95
Non-Cytoplasmic	66	387	0.95