YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26988407, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRASMSVAL LTVAGVALDA LLGEPQRRHP LVAFGNMAGN LERRLNAGGR GWRSHGVSAW  60
   61 ILAVVPLTLV ALVLSWLPYI GWLVDVLALY CAVGLRSLGE HVLPVANALR QGDLAEARRR 120
  121 VGYLVSRETR ELDEPAVARA ATESVLENGS DAVFAALFWF VVAGAPGVVL YRLSNTLDAM 180
  181 WGYRNERFER FGWCAARIDD VLNYIPARLV ALTYALLGKT RLALACWRKQ GPLWDSPNAG 240
  241 PVMAAGAGAL GVELGGPAVY HGELHERPRL GEGPVADADA IERGWQLVQR GVWLWLLVIC 300
  301 LGAYINA

Type	Start	End	Confidence
Cytoplasmic	1	56	0.65
Transmembrane Helix	57	80	0.85
Non-Cytoplasmic	81	151	0.73
Transmembrane Helix	152	174	0.87
Cytoplasmic	175	290	0.66
Transmembrane Helix	291	305	0.80
Non-Cytoplasmic	306	307	0.55