YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148546163, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFIARRLG LLIPTFFGIT LLTFALIRLI PGDPVEVMMG ERRVDPEMHA QAMERLGLNK  60
   61 PLPVQYLDYV GKLAQGDLGE SLRTRESVWR EFLTLFPATL ELAFAALLFA GVVGLLAGVI 120
  121 AALKRGSLFD HGVMGISLAG YSMPIFWWGL ILIMFFSVSL GWTPVSGRID LLYDIEPKTG 180
  181 FMLIDTLLSD EEGAFKDAVM HLILPAIVLG TIPLAVIARM TRSSMLEVLR EDYIRTARAK 240
  241 GLSPARVVFV HGLRNALIPV LTVFGLQVGT LLAGAVLTET IFSWPGIGKW LIEAIGARDY 300
  301 PVVQNGILLI ACLVILVNFV VDILYGLANP RIRHQR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	30	0.94
Non-Cytoplasmic	31	101	0.97
Transmembrane Helix	102	123	0.94
Cytoplasmic	124	137	0.81
Transmembrane Helix	138	163	0.76
Non-Cytoplasmic	164	197	0.97
Transmembrane Helix	198	220	0.88
Cytoplasmic	221	255	0.95
Transmembrane Helix	256	278	0.86
Non-Cytoplasmic	279	305	0.86
Transmembrane Helix	306	328	0.92
Cytoplasmic	329	336	0.95