YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24982022, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLWALLAEQ PAYFLTLATV LGLLVGSFIN VLVYRLPIML ERQWQREAQE VLGLPTTQHA  60
   61 RFDLCLPASR CPHCAHRIRA WENIPVISYL ALGGRCSSCK NRISLRYPVV EVASALLSLV 120
  121 VAWRFGASVE ALVALPLTWC LLALSLIDAD HQLLPDVLVL PTMWLGLIVN AFGIHVPLAD 180
  181 ALWGAVAGYL SLWTVYWVFR LVTGKEGMGY GDFKLMALIG AWGGWQVLPL TLLLSSVVGA 240
  241 LFGLCLLRFR RDAMGTAIPF GPYLAIAGWI AVLWGDEIYA SYMQLLGY

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.96
Transmembrane Helix	12	34	0.93
Cytoplasmic	35	119	0.87
Transmembrane Helix	120	147	0.69
Non-Cytoplasmic	148	152	0.58
Transmembrane Helix	153	174	0.78
Cytoplasmic	175	180	0.50
Transmembrane Helix	181	201	0.73
Non-Cytoplasmic	202	224	0.82
Transmembrane Helix	225	247	0.90
Cytoplasmic	248	254	0.81
Transmembrane Helix	255	275	0.88
Non-Cytoplasmic	276	288	0.84