YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM192_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGGRLEDG SLDILQSTDD DPLLDTQPLP HHSLHAHFRP RFHPLPTVII ANLLLLIHVV  60
   61 FVTLAFLTGV LCLYPDPNED KCPENYTNPL KVQTAIILGK VILWILHLLF ERYIQYHHRK 120
  121 VRSRGYSQIY RSTRHLKALA LTIHSSGNTA LLLLLCVQYS FPEPNKLYLE LILAVLALEL 180
  181 ICSLSCLVLY TVKIRRFNKA KPQPDVLEEE KCYAYPSNIA SETGFRTVSS LEEIVEKQGD 240
  241 IIVYLKRHNA LLSKRLLELA TQPART

Type	Start	End	Confidence
Cytoplasmic	1	47	0.96
Transmembrane Helix	48	68	0.93
Non-Cytoplasmic	69	94	0.88
Transmembrane Helix	95	114	0.92
Cytoplasmic	115	137	0.91
Transmembrane Helix	138	161	0.87
Non-Cytoplasmic	162	170	0.81
Transmembrane Helix	171	192	0.94
Cytoplasmic	193	266	0.99