YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55562749
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRWWLLFIV ISMNLAGYTG ELCQSKIDYC VLDPCRNGAT CVSSLSGFIC QCLEGYFGSA  60
   61 CEEKVDPCMS SPCQNNGTCY VDGVHFTCSC SPGFTGPTCA QLVDFCALSP CAHGMCRSVG 120
  121 TSYKCLCDPG YHGLYCEEEY NECLSAPCLN AATCRDLVNG YECVCLAEYK GTHCELYKDP 180
  181 CANISCLNGG TCDSEGLNGT CICAPGFTGE ECDIDINECD SNPCHHAGTC LDQPNGYTCH 240
  241 CPHGWVGANC EIHLQWKSGH MAESLTNMPR HSLYIIIGAL CVAFILMLII LIVGICRISR 300
  301 IEYQGSSRPA YEEFYNCRSI DSEFSNAIAS IRHARFGKKS RPAMYDVTPI AYEDYSPDDK 360
  361 PLVTLIKTKD L

Type	Start	End	Confidence
Signal Peptide	1	17	0.92
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	272	0.97
Transmembrane Helix	273	296	0.93
Cytoplasmic	297	371	0.98