YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27367882, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLLILTYT ALCIAIFKIF KIPLNKWTVP TAVLGGVVLI GTLILLMNYN HPFTQLGNQV  60
   61 YSTTPIVSGV RGRVFEVPVQ ANQPLKQGDV LFRIDPIPFE AEVAKLEAKV KEASQGALGL 120
  121 ESTLKEAEAA VIKAIAERDK AKREYERYKR GYEKGAFTEQ QMDTTRQAFK AAQAALEVAQ 180
  181 SKQEQAQIAL DSEVGGENTQ VAQLLAELRK AQFDLEQTVV RAPTDGYVTQ LALRPGVMSV 240
  241 PLPLAPVMTF VHSEEKIYTA AFRQNSLQRL QPGFEAEFMF RALPGKVFKG EVIEVLPAIG 300
  301 ESQFQARGAL LGTEALRTSG RVFATLRITD DLSEYHLPMG TAVEVAVYSD SFTHVSIMRK 360
  361 VLIRMKSWQN YLYLDH

Type	Start	End	Confidence
Cytoplasmic	1	26	0.57
Transmembrane Helix	27	49	0.88
Non-Cytoplasmic	50	376	0.94