YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148539963, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLAGASRS RVWSVGLLRL LLLSCFTLQK AGGEIAVQVL SNSTGFLGGS TVLHCSLASK  60
   61 DNVTITQLTW MKRDPDGSHP SVAVFHPKKG PSISDPERVK FLVAKVYEDL RNASLAISNL 120
  121 RVEDEGIYEC QIATFPTGSK SANVWLKVFA RPKNTAEALE PSPTLMPQDV AKCISADGHP 180
  181 PGRITWSSNV NGSYREMKET GSQPGTTTVI SYLSMVPSSQ ADGTNITCTV EHESFQEPDQ 240
  241 QPLILSLPYP PEVSISGYEG NWYIGLTNVN LTCEARSKPP PTNYSWSTAT GPLPNSTHFQ 300
  301 ENGSHLLIST VDDLNNTIFV CKAINALGSG QGQVTILVKE ASEILPPKTS LGTGYIIAIV 360
  361 FCVLIIGVVA GIVFWKYRRG CGRQSRTLDR ENVRYSAANG VSVPNVETNN LR

Type	Start	End	Confidence
Signal Peptide	1	33	0.95
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	353	0.99
Transmembrane Helix	354	375	0.97
Cytoplasmic	376	412	0.98