YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27367577, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.75
Transmembrane Helix	7	28	0.89
Cytoplasmic	29	37	0.74
Transmembrane Helix	38	60	0.87
Non-Cytoplasmic	61	67	0.73
Transmembrane Helix	68	89	0.86
Cytoplasmic	90	95	0.72
Transmembrane Helix	96	118	0.88
Non-Cytoplasmic	119	125	0.59
Transmembrane Helix	126	147	0.75
Cytoplasmic	148	158	0.52
Transmembrane Helix	159	182	0.82
Non-Cytoplasmic	183	252	0.67
Transmembrane Helix	253	272	0.91
Cytoplasmic	273	283	0.80
Transmembrane Helix	284	304	0.90
Non-Cytoplasmic	305	311	0.71
Transmembrane Helix	312	334	0.92
Cytoplasmic	335	344	0.75
Transmembrane Helix	345	365	0.89
Non-Cytoplasmic	366	380	0.79
Transmembrane Helix	381	404	0.88
Cytoplasmic	405	408	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHLITVGAL ESFLVAISVL FLGHFINAKL PILRKFNIPE PIVGGLIVAC IITILHFRGI  60
   61 DLEFNLPLQN TFMLMFFSTV GLAANYTQLL KGGAKVFLFL AVASVYIVIQ NGVGVSLASM 120
  121 LGLDPLMGLI AGSITLSGGH GTGAAWSQTF ADNYGMSNTL EIAMASATFG LIIGGLIGSP 180
  181 VAQRLVDKHN VESEYGRGSK THEKFPELVT YNEYEEDKVT AKKVIEKLFF LIICVTGAKY 240
  241 VEQWVSTYEI KWLMIPDFVY ALFIGVIITN FLEVTKIRKL DAETVDMLGT VSLSLFLAMA 300
  301 LMSLKLWNIF DLAIPFLVIL AVQSVVLALF TYYVTFKVMG SNYDAAVIAG GHCGFGLGAT 360
  361 PTAVMNMGSI VNRFGPSPQA FMVVPIVGAF FIDIVNLIVL QGFISFMG