YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27367405, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.90
Transmembrane Helix	19	38	0.93
Non-Cytoplasmic	39	70	0.82
Transmembrane Helix	71	92	0.92
Cytoplasmic	93	99	0.81
Transmembrane Helix	100	121	0.88
Non-Cytoplasmic	122	127	0.63
Transmembrane Helix	128	147	0.91
Cytoplasmic	148	155	0.67
Transmembrane Helix	156	177	0.92
Non-Cytoplasmic	178	197	0.81
Transmembrane Helix	198	218	0.85
Cytoplasmic	219	238	0.57
Transmembrane Helix	239	258	0.75
Non-Cytoplasmic	259	260	0.48
Transmembrane Helix	261	280	0.75
Cytoplasmic	281	286	0.79
Transmembrane Helix	287	306	0.91
Non-Cytoplasmic	307	314	0.78
Transmembrane Helix	315	335	0.94
Cytoplasmic	336	355	0.96
Transmembrane Helix	356	379	0.91
Non-Cytoplasmic	380	398	0.93
Transmembrane Helix	399	419	0.92
Cytoplasmic	420	431	0.79
Transmembrane Helix	432	452	0.95
Non-Cytoplasmic	453	458	0.81
Transmembrane Helix	459	477	0.95
Cytoplasmic	478	486	0.82
Transmembrane Helix	487	506	0.90
Non-Cytoplasmic	507	524	0.76
Transmembrane Helix	525	547	0.82
Cytoplasmic	548	551	0.52
Transmembrane Helix	552	573	0.63
Non-Cytoplasmic	574	575	0.52
Transmembrane Helix	576	602	0.83
Cytoplasmic	603	616	0.67
Transmembrane Helix	617	636	0.80
Non-Cytoplasmic	637	642	0.72
Transmembrane Helix	643	662	0.95
Cytoplasmic	663	665	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLDITDPV KGRFPFKTAA LLSAAVLLIG LLLQITAPYS QGIGLIWNTL FHFDASNYQH  60
   61 LITHLTYLPR LSVAIICGFA LAVAGCVMQF VLRNPIASPT TLGVAAGAEL GMVLGILLLP 120
  121 ASLAVPGFVP AFIGGCLATG LVFVLSAARG FSPLHMVLAG MVVSLFLGSL NTMLLMLNEQ 180
  181 RLTSIFVWGA GVLNQNDWSS TQMLLPLVLI PTMLLLLLQR PLSALQFGDH VATSLGVNIK 240
  241 QIKLLCLSFA IFITAAVVSE VGLIGFVGIV APAMARMLGA RTLAKQILTS GVIGSAILLI 300
  301 VDLLIQPFSG VGGELLPTGA MTALIGAPFL LWLLQRSKLQ SDLKARSEHV EHYKRVNTRY 360
  361 VLTALTLVLF IVSLFALLLG KNQFGWSFGL TQSLFELRAP RLLVALIAGI GLAFAGTIIQ 420
  421 RISGNPMASP EVLGISSGAA LALVLGTLFG VAVGREQQML LGTLGAVSVA VVVWFMGRKH 480
  481 HFAPTQTLLT GIALSAGLDA LLRIAMSSGH DNASALLTWL SGSTYLVASN DVVLLAIGVV 540
  541 LVGGIALSLS RWLALIGLGE ITANSIGMNA TLVRLVLLLL VAALTTLCTI VIGPLSFVGL 600
  601 LAPHMARSLH QYQARPQMLT AALLGATIMV SADWIGRTLW FPWQFPAGLL ASLIGGGYFL 660
  661 YLMRR