YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27366799, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.47
Transmembrane Helix	15	39	0.83
Cytoplasmic	40	47	0.44
Transmembrane Helix	48	70	0.89
Non-Cytoplasmic	71	89	0.48
Transmembrane Helix	90	121	0.63
Cytoplasmic	122	134	0.52
Transmembrane Helix	135	156	0.61
Non-Cytoplasmic	157	164	0.87
Transmembrane Helix	165	187	0.90
Cytoplasmic	188	234	0.95
Transmembrane Helix	235	256	0.90
Non-Cytoplasmic	257	263	0.85
Transmembrane Helix	264	285	0.93
Cytoplasmic	286	294	0.92
Transmembrane Helix	295	315	0.93
Non-Cytoplasmic	316	336	0.91
Transmembrane Helix	337	357	0.90
Cytoplasmic	358	364	0.76
Transmembrane Helix	365	388	0.86
Non-Cytoplasmic	389	417	0.90
Transmembrane Helix	418	437	0.94
Cytoplasmic	438	442	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYLEFLFLL LMLYIGSRYG GIGLGVVSGI GLVIEVFVFK MPPTSPPVTV MLIILAVVTC  60
   61 ASILEAAGGL KYMLQVAERM LRKNPKRVTL IAPFVTYTMT FMLGTGHAVY SIMPIIGDVA 120
  121 LKNGIRPERP MAAASVASQI AITASPISAA VVYYLAQLSD INHEITLLSI LLVTVPATLF 180
  181 GTLLMSLYSM KRGKELEDDP EYQARLKDPV WREKILNTTA TSLDEHLPAA ARNSVLLFIL 240
  241 SILTIVVIAM IPEVRIIGEG SKPISMAVVI QMMMLCFGGI ILLATKTDPR SVPNGVVFKS 300
  301 GMVAAIAIFG IAWMSDTYFQ YAMPQFKSGI VEMVNNYPWT FALALFIVSV VVNSQAAVAR 360
  361 MMLPVGLGLG LEPALLVGLM PALYGYFFIP NYPSDIATVN FDNTGTTKIG KWYFNHSFMS 420
  421 VGLIGVIGAC CLGYLLGQMI IG