YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27366653, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAIITACP SGVANSIIAA GLLEQAAKSL NWDASIECQS SVMPTTPLSA QQIADADVVV  60
   61 IAANTPIDES RFVGKKLYRS EISAVTSDAN AFLQSAVEKA QLLQASAGVQ PTVQTAAKKI 120
  121 VAITACPTGV AHTFMAAEAL EEEGKRRGHQ IKVETRGSVG AKNQLTEQEI ADADLVIIAA 180
  181 DIEVPLDRFN GKLMYRTKTG PALKKTGEEM DKAFAQATVY QHTASAGSSN ASEEKKGVYK 240
  241 HLMTGVSHML PVVVAGGLII ALSFVFGIEA FKEEGTLASA LMTIGGGSAF ALMIPVLAGF 300
  301 IAFSIADRPG LAPGLIGGML ASSTGAGFLG GIAAGFIAGY SAKFIADKVQ LPQSMEALKP 360
  361 ILIIPFIASL FTGLTMIYIV GGPVSSIMSA MTEFLNNMGS ANAVLLGVIL GAMMCFDLGG 420
  421 PVNKAAYTFG VGLLASQTYA PMAAIMAAGM VPALGMGLAT FLARDKFEPS EREAGKASFV 480
  481 LGLCFISEGA IPFAAKDPMR VIPACMAGGA LTGALSMLFG AKLMAPHGGL FVLLIPNAIT 540
  541 PVLMYLVAIA AGTALTGFGY AFLKNRAEAK EEATA

Type	Start	End	Confidence
Cytoplasmic	1	244	0.57
Transmembrane Helix	245	268	0.86
Non-Cytoplasmic	269	279	0.49
Transmembrane Helix	280	305	0.85
Cytoplasmic	306	314	0.48
Transmembrane Helix	315	340	0.84
Non-Cytoplasmic	341	360	0.55
Transmembrane Helix	361	382	0.93
Cytoplasmic	383	397	0.49
Transmembrane Helix	398	420	0.85
Non-Cytoplasmic	421	438	0.56
Transmembrane Helix	439	462	0.86
Cytoplasmic	463	500	0.46
Transmembrane Helix	501	523	0.87
Non-Cytoplasmic	524	540	0.56
Transmembrane Helix	541	563	0.82
Cytoplasmic	564	575	0.68