YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHAB_VIBVU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.79
Transmembrane Helix	20	50	0.75
Non-Cytoplasmic	51	89	0.46
Transmembrane Helix	90	115	0.77
Cytoplasmic	116	123	0.52
Transmembrane Helix	124	144	0.72
Non-Cytoplasmic	145	147	0.47
Transmembrane Helix	148	166	0.86
Cytoplasmic	167	200	0.86
Transmembrane Helix	201	223	0.82
Non-Cytoplasmic	224	240	0.83
Transmembrane Helix	241	263	0.89
Cytoplasmic	264	306	0.84
Transmembrane Helix	307	337	0.82
Non-Cytoplasmic	338	352	0.59
Transmembrane Helix	353	372	0.92
Cytoplasmic	373	392	0.56
Transmembrane Helix	393	412	0.56
Non-Cytoplasmic	413	454	0.81
Transmembrane Helix	455	475	0.84
Cytoplasmic	476	482	0.76
Transmembrane Helix	483	506	0.85
Non-Cytoplasmic	507	529	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMSLGNAFI KNFLGKAPDW YKVAIISFLI INPIVFFFVD PFVAGWLLVV EFIFTLAMAL  60
   61 KCYPLQPGGL LAIEAIAIGM TSPEQVKHEL VANIEVLLLL VFMVAGIYFM KQLLLFIFTK 120
  121 ILLGIRSKAI LSLAFCFAAA FLSAFLDALT VIAVVISVAV GFYSIYHKVA SGKGVSSDHD 180
  181 HTQDDHLAEL TREDLENYRA FLRSLLMHAG VGTALGGVTT MVGEPQNLII ADQASWLFGE 240
  241 FLIRMAPVTL PVFVCGLLTC FAVEKLKVFG YGAELPDNVR HILVEFDKEE RKARTNQDVA 300
  301 KLWIQGLIAV WLIVGLALHL AAVGLIGLSV IILATAFTGV IEEHSLGKAF EEALPFTALL 360
  361 AVFFSIVAVI IDQELFKPVI DAVLAVEDKG TQLAMFYVAN GLLSMVSDNV FVGTVYINEV 420
  421 KTALVEGIIT RDQFDLLAVA INTGTNLPSV ATPNGQAAFL FLLTSALAPL IRLSYGKMVI 480
  481 MALPYTIVLA LVGLFGIVFL LEPMTAWFYD AGWIAHHVGE ATHAVSGGH