YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27361640, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.94
Transmembrane Helix	17	41	0.84
Cytoplasmic	42	53	0.95
Transmembrane Helix	54	75	0.89
Non-Cytoplasmic	76	95	0.84
Transmembrane Helix	96	118	0.92
Cytoplasmic	119	126	0.95
Transmembrane Helix	127	147	0.95
Non-Cytoplasmic	148	187	0.92
Transmembrane Helix	188	208	0.94
Cytoplasmic	209	218	0.81
Transmembrane Helix	219	238	0.94
Non-Cytoplasmic	239	388	0.99
Transmembrane Helix	389	409	0.94
Cytoplasmic	410	420	0.85
Transmembrane Helix	421	444	0.88
Non-Cytoplasmic	445	470	0.91
Transmembrane Helix	471	494	0.85
Cytoplasmic	495	528	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDVVDLSRL QFALTAMYHF LFVPLTLGMA FLLAIMESLY VMTDKQIYKD MTKFWGKLFG  60
   61 INFALGVATG LTMEFQFGTN WSYYSHYVGD IFGAPLAIEA LVAFFLESTF VGLFFFGWER 120
  121 LSKRQHLAVT WLVALGSNFS ALWILVANGW MQNPVGAEFN FETMRMEMVS FAEVVLNPVA 180
  181 QVKFVHTVAS GYTTGAMFIL GISSYYLLKG RDVAFARRSF AIAASFGMAS ILSVIVLGDE 240
  241 SGYELGEVQK VKLAAVEAEW HTEPAPAAFT LFGLPNQETM HTDYAIKIPY VMGIIATRSF 300
  301 DEQVTGLRDL RDQHVDRIRN GMYAYELLEK LRAGDRSEAN KAAFDEVKGD LGYGLLLKRY 360
  361 TDKVTDATEE QIQAAADDSI PTVWPLFMSF RIMVGCGFIM LFVFGAAFVQ TCRQKIEQKP 420
  421 WILKAALFSI PLPWIAIEAG WFVAEYGRQP WAVGEILPTH VAASALTIGE LWTSLFAILA 480
  481 LYTVFLIAEV YLMLKFARKG PSSLKTGRYH FEQNGESIED KVNRQVEA