YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27365311, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.89
Transmembrane Helix	7	28	0.93
Cytoplasmic	29	41	0.90
Transmembrane Helix	42	63	0.92
Non-Cytoplasmic	64	90	0.92
Transmembrane Helix	91	113	0.83
Cytoplasmic	114	121	0.86
Transmembrane Helix	122	144	0.89
Non-Cytoplasmic	145	176	0.92
Transmembrane Helix	177	198	0.90
Cytoplasmic	199	210	0.87
Transmembrane Helix	211	232	0.91
Non-Cytoplasmic	233	247	0.88
Transmembrane Helix	248	265	0.94
Cytoplasmic	266	273	0.87
Transmembrane Helix	274	294	0.92
Non-Cytoplasmic	295	312	0.78
Transmembrane Helix	313	332	0.96
Cytoplasmic	333	351	0.88
Transmembrane Helix	352	375	0.90
Non-Cytoplasmic	376	392	0.87
Transmembrane Helix	393	412	0.94
Cytoplasmic	413	421	0.85
Transmembrane Helix	422	445	0.88
Non-Cytoplasmic	446	451	0.82
Transmembrane Helix	452	471	0.95
Cytoplasmic	472	490	0.96
Transmembrane Helix	491	511	0.94
Non-Cytoplasmic	512	617	0.98
Transmembrane Helix	618	637	0.92
Cytoplasmic	638	660	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAEIGHFAL IVSLAMAVLL SLLPLWGASN NNTMLMNSAR PLSWAMFIML FISFIVLSYG  60
   61 FYANDFTLQY VASNSNSQLP WYYRLTAVWG AHEGSLLLWV LIQAAWTVAV ATFSRGMPQE 120
  121 SVARVLAVMG MISVGFLLFI IVTSNPFLRT LPFFPVDGRD LNPLLQDPGL IVHPPMLYMG 180
  181 YVGFSVAFSF AIASLMTGRL DTAWARWSRP WTTAAWVFLT LGIALGSWWA YYELGWGGWW 240
  241 FWDPVENASF MPWLAGTALM HSLAVTEKRG TFKAWTVLLA ISAFSLSLLG TFLVRSGILV 300
  301 SVHAFASDPS RGMFILGFLV FVIGGSLLLF AVKGAAVRVR GNFDLVSREN ALLANNVLLI 360
  361 AALVVVLVGT LLPLVHKQIG LGSVSIGAPF FDMLFAWLMM PFAFLLGIGP LIRWKRDQLS 420
  421 HLIKPMAISG VLAFALGYLC VYLFADFFDV MAYIGWVMAI WIIAMHGFEL YERATHRHPF 480
  481 LTGVRKLQRS HWAMMLGHVG LAVTVIGIAM VQNYSIERDV RLAPGEHFQI QGYDFYFSGL 540
  541 RDKDGPNYDG YIADFEITHN GQYVNTLHAE KRFYRTAKSM MTEAAIDRGI TRDLYIAMGE 600
  601 RLEDNRSWAV RIYYKPFVRW IWAGSLIMSF GGLLAMSDRR YRFRKSNKAE TKTKLNEQEA 660
  661