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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|27361441, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKFTLPFA DKLPKIPQRS VPAIGAPIMV LATLAMVVLP IPPFLLDMFF TFNIALAMVV  60
   61 LLVTVYTRRP LDFAAFPTVL LIATLLRLAL NVASTRVVLL KGHEGGDAAG NVIEAFGNVV 120
  121 IGGNYAVGLV VFLILMIINF MVVTKGAGRI SEVSARFTLD ALPGKQMAID ADLNAGLIDQ 180
  181 EQARLRRFEV TKEADFYGSM DGASKFVKGD AIAGILILFI NIIGGLSIGM AQYDLGFSDA 240
  241 IKIYTLLTIG DGLVAQIPSL LLSIAAAMMV TRQNTDEDMG EQMLFQMFDN PKALTITAAI 300
  301 LGIMGIVPGM PHFAFLTLAA IAGAGAYFID KKQKQKAKEP KVPVVADSSN APSVRELSWD 360
  361 DVQPVDIIGL EVGYRLIPLV DRDQGGELLE RVKGVRKKLS QDFGFLIPPV HIRDNLELTP 420
  421 NSYRITLMGV AVGEAEIRPD QELAINPGQV YGMIDGEPTI DPAFGLEAVW IRPDQREHAQ 480
  481 ALGYTVVDSS TVLATHMSQL LTNNASQLLG HEEVQNLLEM LGRSAPKLVE NFVPDQLSLG 540
  541 SVVKVLQNLL NEAIPIRDIR TIVQTLAEYS SKSQEPDILT AAVRISLKRL IVQEINGIEP 600
  601 ELPVITLIPE LEQILHQTMQ ASGGESAGIE PGLAERLQSS LMMATQEQEL KGEPAVLLTS 660
  661 GVLRSTLAKF VKNTIPNLRV LSYQEIPDEK QIRIVQAVGN 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle