YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27365212, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.62
Transmembrane Helix	7	24	0.74
Non-Cytoplasmic	25	25	0.39
Transmembrane Helix	26	45	0.79
Cytoplasmic	46	53	0.69
Transmembrane Helix	54	73	0.75
Non-Cytoplasmic	74	82	0.83
Transmembrane Helix	83	106	0.85
Cytoplasmic	107	120	0.88
Transmembrane Helix	121	141	0.93
Non-Cytoplasmic	142	148	0.87
Transmembrane Helix	149	171	0.92
Cytoplasmic	172	189	0.91
Transmembrane Helix	190	211	0.90
Non-Cytoplasmic	212	218	0.80
Transmembrane Helix	219	238	0.95
Cytoplasmic	239	259	0.90
Transmembrane Helix	260	281	0.63
Non-Cytoplasmic	282	282	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKQRIITA LILAPLVILG IFELSLPLFI AALTAVTFLG FWEWTQFVEA KSRIKAMLPA  60
   61 VVVTIGSFFW IEADSASLNQ IGLPHYLMLA AGSIWWLYAS ALAITYPKST QSWQGHKPLR 120
  121 HLFGLLTLIP FMWSVILLRA VDIESAPYFG AKLVMFVCLL VWAADSGAYF AGKTLGKRKM 180
  181 APKVSPNKTI EGLIGGVITA IIVGWFFSGW FDIPFSSPLH MVLITLATVV ISVLGDLVES 240
  241 MFKRESGIKD SSNIIPGHGG ILDRIDSLTA AFPIFALLYF LF