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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|27361197, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.67
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKNLILWLV IAVVLMSVFQ SFGPGESNGR AVDYTTFVQE VGQGQIQEAT FKDGEITFVR  60
   61 RGGGGKFVTY MPVYDQKLLD DLINQNVKVQ GTPPEEQSLL GTIFISWFPM ILLIGVWIFF 120
  121 MRQMQGGGGK GAMSFGKSKA RMMSEEQIKT TFGDVAGCDE AKEDVKELVD YLRDPSRFQK 180
  181 LGGKIPTGVL MVGPPGTGKT LLAKAIAGEA KVPFFTISGS DFVEMFVGVG ASRVRDMFEQ 240
  241 AKKASPCIIF IDEIDAVGRQ RGAGVGGGHD EREQTLNQML VEMDGFEGNE GIIVIAATNR 300
  301 PDVLDPALLR PGRFDRQVVV GLPDVRGREQ ILKVHMRKVP LAGDVEPSLI ARGTPGFSGA 360
  361 DLANLVNEAA LFAARGNKRN VSMVEFELAK DKIMMGAERR SMVMSEEIKE STAYHEAGHA 420
  421 IVGRLVPEHD PVYKVSIIPR GRALGVTMYL PEQDRVSMSR QHLESMISSL YGGRLAEELI 480
  481 YGVDRVSTGA SNDIERATDI ARKMVTQWGF SEKLGPMLYA EEEGEVFLGR SVTQTKHMSD 540
  541 DTAKLIDDEV RKLIDRNYER ARQILIDNMD IMHAMKDALM KYETIDAGQI DDLMARKETI 600
  601 REPAGWGDQA ATEKTEKSEA KAEEKTAEPE VTAQSQPDEV QQPTDKKDAE 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle