YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|27365036, gi|...
Protein type: Transmembrane
Type Confidence: 0.65
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKFYRKQKF KRLQSTLMTA FLVLSITPLT ITAIFFLQSH SKDLQEQSTS HLLSVRDTKQ  60
   61 QQILDYFQAQ ETEVMGFVRS ELAYASGGRF YGLVNAFKSL GVDMEQAREN AQQRYIQGSG 120
  121 DQIKTSILPE SSSFVGSERY RLLHKRYHWA YLELLKRSDF DDILLVDLDG NVTYSIYKNE 180
  181 NFGTNLIEGP FKESMLGKSF RQLANDVSEK RKQNEDYTPV YISDFSVEDG KQVAWLGAPI 240
  241 IQQGYLHSYA MFRLPNNGIT KLIADINKDA AIHTLLVGSD HLPRTMTTKQ TDIESSIEVV 300
  301 DKALAGLTDV GTYINSSDEA TIAAYAPISF KGQTWALVVQ LPEKEAFARI HQLEKLFVIA 360
  361 MLIAIVLVFI SSHYLSNFIT SPLLKLTWAA ERVSAGDLDE NMINTERKDE IGRLAISFER 420
  421 MQRSIRDKIQ LIKTQNAELE KNLQLIQKQN DELQLADKLK DEFLATTSHE LRTPLHGMIG 480
  481 IAETLISGAN GPLPSNQRYQ LDIIIKSGQR LATLVDDLLD YHKMRYGSLD IQKSAVNLAS 540
  541 ATRLVLELSH HLLGNKTLRI INQVSNDVAP VSADPQRLEQ VLYNLIGNAI KYTTEGKIVI 600
  601 SANVVDDKVR VQVVDTGQGI PAEQLEHIFE PLIQAGRDSG RYRQGAGLGL SISRQLIELM 660
  661 GGSLYVSSQP MVGTTFSFTL PLASADEISA TEVMQNQHHF QAPDSNELIS LDNSSLPENP 720
  721 NGPLLIVADD EPVNLRVLES FLRIEGYRVQ TASDGPDTLE LIEHEKPALL LLDIMMPGMS 780
  781 GYQVCHQLRQ QYDMAELPII MLTALSQSED RVRGFEAGAN DYLTKPFNKQ ELAARIKAHL 840
  841 MASKAEARRL ENNRLEAELR QRAMVEASLL ETQGRLLEQL ESAPEAIICI REDKRIRFAN 900
  901 DAACKLFKRS LEQLKRSNAE ELIAPKYLTV KQQHYCGNID IYVDDVRQHI ETDILKLPEG 960
  961 SGLDAMFIFN VGGGAAASRV HNLETAVEVL SSYAFDGDKE RLQSLKELGG EFTRLADKAL1020
 1021 GTNKNKQELM REVLVDLMTH ALDYWESVTG ENKFTFAEQS GLWRVYLDRS TLQTRTLDKY1080
 1081 MRIETLPKTP RWRTVLSSIE YILEHCKEQS PERTYIEMQR DKLQRLLTS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle