YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254366282, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	158	0.66
Transmembrane Helix	159	188	0.83
Cytoplasmic	189	206	0.78
Transmembrane Helix	207	229	0.93
Non-Cytoplasmic	230	234	0.85
Transmembrane Helix	235	254	0.93
Cytoplasmic	255	268	0.73
Transmembrane Helix	269	290	0.87
Non-Cytoplasmic	291	311	0.86
Transmembrane Helix	312	333	0.90
Cytoplasmic	334	340	0.74
Transmembrane Helix	341	361	0.91
Non-Cytoplasmic	362	365	0.79
Transmembrane Helix	366	385	0.92
Cytoplasmic	386	391	0.87
Transmembrane Helix	392	414	0.90
Non-Cytoplasmic	415	430	0.80
Transmembrane Helix	431	450	0.91
Cytoplasmic	451	529	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQDRSDNTA LRRGLRIALR GRRDPLPVAG RRSRTSGGIG DLHTRKVLDL TIRLAEVMLS  60
   61 SGSGTADVVA TAQDVAQAYQ LTDCVVDITV TTIIVSALAT TDTPPVTIMR SVRTRSTDYS 120
  121 RLAELDRLVQ RITSGGVAVD QAHEAMDELT ERPHPYPRWL ATAGAAGFAL GVAMLLGGTW 180
  181 LTCVLAAVTS GVIDRLGRLL NRIGTPLFFQ RVFGAGIATL VAVAAYLIAG QDPTALVATG 240
  241 IVVLLSGMTL VGSMQDAVTG YMLTALARLG DALFLTAGIV VGILISLRGV TNAGIQIELH 300
  301 VDATTTLATP GMPLPILVAV SGAALSGVCL TIASYAPLRS VATAGLSAGL AELVLIGLGA 360
  361 AGFGRVVATW TAAIGVGFLA TLISIRRQAP ALVTATAGIM PMLPGLAVFR AVFAFAVNDT 420
  421 PDGGLTQLLE AAATALALGS GVVLGEFLAS PLRYGAGRIG DLFRIEGPPG LRRAVGRVVR 480
  481 LQPAKSQQPT GTGGQRWRSV ALEPTTADDV DAGYRGDWPA TCTSATEVR