YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15842422, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.88
Transmembrane Helix	77	97	0.87
Non-Cytoplasmic	98	100	0.58
Transmembrane Helix	101	118	0.70
Cytoplasmic	119	124	0.67
Transmembrane Helix	125	143	0.75
Non-Cytoplasmic	144	148	0.66
Transmembrane Helix	149	170	0.91
Cytoplasmic	171	190	0.90
Transmembrane Helix	191	212	0.92
Non-Cytoplasmic	213	220	0.77
Transmembrane Helix	221	243	0.92
Cytoplasmic	244	259	0.87
Transmembrane Helix	260	279	0.95
Non-Cytoplasmic	280	284	0.81
Transmembrane Helix	285	305	0.90
Cytoplasmic	306	325	0.91
Transmembrane Helix	326	346	0.72
Non-Cytoplasmic	347	349	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSVAQKRIS TRPRTNTSPK LMSWLNTKKA SCWRSSGRSA TKSVTTNDAG TGNPAEQPAR  60
   61 GAKQQPATET SRAGRDLRAA IVVGLSIGLV LIAVLVFVPR VWVAIVAVAT LVATHEVVRR 120
  121 LREAGYLIPV IPLLIGGQAA VWLTWPFGAV GALAGFGGMV VVCMIWRLFM QDSVTRPTTG 180
  181 GAPSPGNYLS DVSATVFLAV WVPLFCSFGA MLVYPENGSG WVFCMMIAVI ASDVGGYAVG 240
  241 VLFGKHPMVP TISPKKSWEG FAGSLVCGIT ATIITATFLV GKTPWIGALL GVLFVLTTAL 300
  301 GDLVESQVKR DLGIKDMGRL LPGHGGLMDR LDGILPSAVA AWIVLTLLP