YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y1877_MYCTO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.97
Transmembrane Helix	28	48	0.92
Non-Cytoplasmic	49	66	0.79
Transmembrane Helix	67	86	0.93
Cytoplasmic	87	93	0.87
Transmembrane Helix	94	115	0.92
Non-Cytoplasmic	116	122	0.71
Transmembrane Helix	123	144	0.88
Cytoplasmic	145	153	0.80
Transmembrane Helix	154	174	0.94
Non-Cytoplasmic	175	182	0.83
Transmembrane Helix	183	205	0.92
Cytoplasmic	206	211	0.92
Transmembrane Helix	212	234	0.89
Non-Cytoplasmic	235	240	0.77
Transmembrane Helix	241	263	0.92
Cytoplasmic	264	280	0.82
Transmembrane Helix	281	303	0.90
Non-Cytoplasmic	304	319	0.80
Transmembrane Helix	320	340	0.91
Cytoplasmic	341	347	0.79
Transmembrane Helix	348	367	0.92
Non-Cytoplasmic	368	376	0.82
Transmembrane Helix	377	398	0.92
Cytoplasmic	399	413	0.82
Transmembrane Helix	414	434	0.91
Non-Cytoplasmic	435	443	0.72
Transmembrane Helix	444	462	0.70
Cytoplasmic	463	479	0.64
Transmembrane Helix	480	501	0.90
Non-Cytoplasmic	502	687	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPTAPTTA PTAIRAGGPL LSPVRRNIIF TALVFGVLVA ATGQTIVVPA LPTIVAELGS  60
   61 TVDQSWAVTS YLLGGTVVVV VAGKLGDLLG RNRVLLGSVV VFVVGSVLCG LSQTMTMLAI 120
  121 SRALQGVGAG AISVTAYALA AEVVPLRDRG RYQGVLGAVF GVNTVTGPLL GGWLTDYLSW 180
  181 RWAFWINVPV SIAVLTVAAT AVPALARPPK PVIDYLGILV IAVATTALIM ATSWGGTTYA 240
  241 WGSATIVGLL IGAAVALGFF VWLEGRAAAA ILPPRLFGSP VFAVCCVLSF VVGFAMLGAL 300
  301 TFVPIYLGYV DGASATASGL RTLPMVIGLL IASTGTGVLV GRTGRYKIFP VAGMALMAVA 360
  361 FLLMSQMDEW TPPLLQSLYL VVLGAGIGLS MQVLVLIVQN TSSFEDLGVA TSGVTFFRVV 420
  421 GASFGTATFG ALFVNFLDRR LGSALTSGAV PVPAVPSPAV LHQLPQSMAA PIVRAYAESL 480
  481 TQVFLCAVSV TVVGFILALL LREVPLTDIH DDADDLGDGF GVPRAESPED VLEIAVRRML 540
  541 PNGVRLRDIA TQPGCGLGVA ELWALLRIYQ YQRLFEAVRL TDIGRHLHVP YQVFEPVFDR 600
  601 LVQTGYAARD GDILTLTPSG HRQVDSLAVL IRQWLLDHLA VAPGLKRQPD HQFEAALQHV 660
  661 TDAVLVQRDW YEDLGDLSES RQLAATT