YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|121492815, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPGFDALPE VLRPVARPQP PNAHPVAQPP AQALVDCGVY VCGQRLPGKY TYAAALREVR  60
   61 EIELTGQEAF VWIGLHEPDE NQMQDVADVF GLHPLAVEDA VHAHQRPKLE RYDETLFLVL 120
  121 KTVNYVPHES VVLAREIVET GEIMIFVGKD FVVTVRHGEH GGLSEVRKRM DADPEHLRLG 180
  181 PYAVMHAIAD YVVDHYLEVT NLMETDIDSI EEVAFAPGRK LDIEPIYLLK REVVELRRCV 240
  241 NPLSTAFQRM QTESKDLISK EVRRYLRDVA DHQTEAADQI ASYDDMLNSL VQAALARVGM 300
  301 QQNMDMRKIS AWAGIIAVPT MIAGIYGMNF HFMPELDSRW GYPTVIGGMV LICLFLYHVF 360
  361 RNRNWL

Type	Start	End	Confidence
Cytoplasmic	1	308	0.93
Transmembrane Helix	309	330	0.91
Non-Cytoplasmic	331	339	0.78
Transmembrane Helix	340	360	0.95
Cytoplasmic	361	366	0.88