YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|121636953, gi...
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEAKRPESK RRSPASRPGK AGDSVRGGRA TKPSAKPSTP APHASRKTTR TPHEHIVEPI  60
   61 KRAITESVEK RSEQRLGFTA RRAAILAAVV CVLTLTIARP VRTYFAQRAE MEQLAATEAM 120
  121 LRRQIADLEE QQVKLADPAY IAAQARERLG FVMPGDIPFQ VQLPSTPLAP PQPGSDAATA 180
  181 TNNEPWYTAL WHTIADDPHL PPAAPPAPEP GRPGPLPPAS PNPEQPGG

Type	Start	End	Confidence
Cytoplasmic	1	77	0.79
Transmembrane Helix	78	98	0.78
Non-Cytoplasmic	99	228	0.94