YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27364894, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAMSFLIST LFDLYIMVVI LRIWLQAARA DFYNPFSQFI VKATQPVIGP LRRVIPSIGS  60
   61 IDLATVLFAY VLCVLKFVAL ILIASSGSVT FSADFLYLGL LSLVKAAGGL LFWVLLIRAI 120
  121 LSWVSQGRSP IEYVFHQLTE PMLAPIRRIL PAMGGFDLSV LVLFIALQFA NFLMGDVIGP 180
  181 IWYQL

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.65
Transmembrane Helix	6	25	0.84
Cytoplasmic	26	62	0.75
Transmembrane Helix	63	84	0.89
Non-Cytoplasmic	85	94	0.69
Transmembrane Helix	95	117	0.86
Cytoplasmic	118	151	0.80
Transmembrane Helix	152	172	0.88
Non-Cytoplasmic	173	185	0.77