YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27364831, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRGFTLVE MVLTLIVGSI LVLGIAGFVE LGTKGYADSV DRQRIQTQAQ FVLEKLSREF  60
   61 RHAVPNSFSD SGNCLSFYPI VYSGFYAVEG NDIRFLIGNS NVTPPLANGL SLVINPSRQQ 120
  121 DLVNDSFDVS GLTNGAGYFA VLNQAASLES NSINRRHYIF NANGRVEYCF TAGRISRNGV 180
  181 QVADSVSAAS FNYLEPTLQR GGLVHIKLTF TQNDESSHYQ QDVQVLNVP

Type	Start	End	Confidence
Cytoplasmic	1	7	0.48
Transmembrane Helix	8	29	0.58
Non-Cytoplasmic	30	229	0.81