YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27364476, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.88
Transmembrane Helix	10	32	0.84
Non-Cytoplasmic	33	43	0.63
Transmembrane Helix	44	63	0.90
Cytoplasmic	64	70	0.91
Transmembrane Helix	71	92	0.92
Non-Cytoplasmic	93	131	0.93
Transmembrane Helix	132	156	0.86
Cytoplasmic	157	181	0.87
Transmembrane Helix	182	201	0.94
Non-Cytoplasmic	202	233	0.93
Transmembrane Helix	234	255	0.92
Cytoplasmic	256	271	0.92
Transmembrane Helix	272	290	0.95
Non-Cytoplasmic	291	325	0.70
Transmembrane Helix	326	349	0.83
Cytoplasmic	350	390	0.64
Transmembrane Helix	391	413	0.89
Non-Cytoplasmic	414	422	0.55
Transmembrane Helix	423	445	0.65
Cytoplasmic	446	453	0.40
Transmembrane Helix	454	479	0.83
Non-Cytoplasmic	480	481	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNFRPVLSV IGLVLSKLAL FMYVPTLVAF FTGTGGFLDF GQAVLITHFA AFVCLSIGRT  60
   61 AHFKLSVRDM FLITSLVWTI ASAFAALPFM FINHISFTDA YFETMSGITT TGSTVLSGLD 120
  121 NMAPSILLWR SILQWLGGIG FIVMAVAVLP MLNVGGMKLF QTESSDWSDK SSPRAKTVAK 180
  181 NIVVVYLVLT GLCLIGYLLT GMNLFDAINH SFTTLSTGGY STSDGSMNHF SNGAHWVATL 240
  241 FMFLGGLPFL LFVSAMRKRR LDALIKDAQV RGFTYLFLGT SLVISAWLVI RDGYTIADAL 300
  301 RVAMFNIVSV VTTTGFGLED FTAWGALPTT LFAFLMMAGA CSGSTSGGIK IFRFQIAMTL 360
  361 LNKQIMKLIH PSGIFVQRYN QRPVNDDIVR SVVAFGLMFF ITIIAIAGGL SAMGLDPVTS 420
  421 ISGSITAVAN VGPGMGSIIG PTGNFAPLPD AAKWLLSFGM LMGRLEILTL LVLFFPAFWR 480
  481 R