YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27360410, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGFKTIAAA LLASLFMVSS AHAEAPKSLN ELLKNVKSES IVESKENKAR EQEFLADRNK  60
   61 QAELLKQAKA QLKAETALGE QLKATFDDND KKLTELTETL RQRSGTLGEM FGVVRQYAGE 120
  121 FKGLFNASQN AVQFPQRDAL LTKLAESKEL PSTEELESFW HTVLQQIIVS GETSTTPATV 180
  181 VYGEGKEAVR DVTLVGEFNA IADGKYVTYV PQTGKFEELS RQPRANITRH VAGFESTSSS 240
  241 YEPLFIDPSR GVILSLLVQS PTVKERIDQG GIVGYVILAM GALGALIALF CYLRLLVIGG 300
  301 KMRKQAKSDA VIEGNPLGEV IQAYQDHKGD NLEDLEAKLD EIILRNAPKI ERFIVSIKLF 360
  361 ASVAPLLGLL GTVMGMIGTF QAITLFGTGD PKLMAGGISE ALVTTMLGLV VAIPLLFFYT 420
  421 LVHSKGRRLV QTLEEQSAGF IARYQEKLHT AER

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	270	0.99
Transmembrane Helix	271	296	0.89
Cytoplasmic	297	358	0.96
Transmembrane Helix	359	380	0.90
Non-Cytoplasmic	381	400	0.80
Transmembrane Helix	401	422	0.92
Cytoplasmic	423	453	0.99