YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29610974, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALATRTDRR SSMARTVWDS SVGKKTVMAV SGLVMLLYLV VHMIGNLKIF FGSGEFNHYA  60
   61 HWLRTLGEPF LHYEWALWII RVALVAAVVA HATAAYQLSR RDIRARPSKY VHRKARASYA 120
  121 TRTMRWGGVI LGLFIVWHIL DLTTGSVHPG GFQSGHPYQN VVDTFSTWYG NIIYIVAMLA 180
  181 LGLHIRHGFW SAAQTLGAGS RTRDRALKTV ANVLALLLTA GFVAVPVGVM TGVVS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	44	0.89
Non-Cytoplasmic	45	76	0.92
Transmembrane Helix	77	98	0.93
Cytoplasmic	99	122	0.92
Transmembrane Helix	123	142	0.91
Non-Cytoplasmic	143	166	0.91
Transmembrane Helix	167	190	0.85
Cytoplasmic	191	209	0.92
Transmembrane Helix	210	230	0.95
Non-Cytoplasmic	231	235	0.74