YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29833815, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLEKVRPV RTPAAAREPR ATDEHGRRIR VWELALRYLL LLAVLALTVG PFLWQLSTSL  60
   61 KGPTEDIFSS PPKFLPGDPT LHNYQRVADT IPVWDYAFNS LKVAAANVVT NCVGSALAGY 120
  121 ALARLRYRGR RVATLVFILA MLVPVEGIII AQFTTMRELG LNNTLIGVVL PGCIGAMNVL 180
  181 LMRNAFLNLP HEIEEAAYVD GANAWQRFLR IALPSVKGTL AVVAIFAFMG AWDDFLWPLI 240
  241 VLSDPSKFTL TIGLNYLHGT FANDERVVAA GTVIAVAPLI ALFACLQRYF FRGVGEGAVK 300
  301 G

Type	Start	End	Confidence
Cytoplasmic	1	33	0.99
Transmembrane Helix	34	54	0.93
Non-Cytoplasmic	55	102	0.95
Transmembrane Helix	103	123	0.95
Cytoplasmic	124	131	0.91
Transmembrane Helix	132	153	0.93
Non-Cytoplasmic	154	163	0.72
Transmembrane Helix	164	182	0.95
Cytoplasmic	183	212	0.88
Transmembrane Helix	213	232	0.91
Non-Cytoplasmic	233	266	0.92
Transmembrane Helix	267	290	0.89
Cytoplasmic	291	301	0.92