YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29833356, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGALRGGRSM SATATTARKP RALGRRRKGS LAWHLGALLV LAVVLYPVVW VIGASFKPSK  60
   61 EIIGSLELFP TEPIISNFKG LADGIADVSI ATFFQNSLVY ALGSVVGILV SCSLTAYAFA 120
  121 RIRFAGRNLM FSLMIGTLLL PYHVLLIPQY VMFQKLELIN TYVPLLIGKY LATEAFFVFL 180
  181 MVQFMRNLPR ELDEAARLDG CGHLRIYWSI VLPLCRSALI TSAIFTFINA WNDFMGPLIY 240
  241 LNEPGNYTVS LGLMLFRDSD GVTSNYGGMI AMSLVALLPV LLFFLAFQRH LIDGMATSGL 300
  301 KG

Type	Start	End	Confidence
Cytoplasmic	1	30	0.97
Transmembrane Helix	31	52	0.92
Non-Cytoplasmic	53	97	0.96
Transmembrane Helix	98	119	0.94
Cytoplasmic	120	128	0.79
Transmembrane Helix	129	147	0.94
Non-Cytoplasmic	148	165	0.82
Transmembrane Helix	166	185	0.93
Cytoplasmic	186	205	0.92
Transmembrane Helix	206	228	0.93
Non-Cytoplasmic	229	265	0.90
Transmembrane Helix	266	287	0.91
Cytoplasmic	288	302	0.88