YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29832374, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.97
Transmembrane Helix	29	49	0.93
Non-Cytoplasmic	50	69	0.87
Transmembrane Helix	70	90	0.92
Cytoplasmic	91	100	0.86
Transmembrane Helix	101	121	0.92
Non-Cytoplasmic	122	129	0.72
Transmembrane Helix	130	151	0.91
Cytoplasmic	152	160	0.85
Transmembrane Helix	161	181	0.95
Non-Cytoplasmic	182	188	0.85
Transmembrane Helix	189	211	0.92
Cytoplasmic	212	221	0.83
Transmembrane Helix	222	242	0.95
Non-Cytoplasmic	243	250	0.72
Transmembrane Helix	251	270	0.94
Cytoplasmic	271	287	0.89
Transmembrane Helix	288	310	0.89
Non-Cytoplasmic	311	324	0.82
Transmembrane Helix	325	347	0.83
Cytoplasmic	348	354	0.79
Transmembrane Helix	355	374	0.89
Non-Cytoplasmic	375	384	0.82
Transmembrane Helix	385	405	0.94
Cytoplasmic	406	420	0.75
Transmembrane Helix	421	442	0.88
Non-Cytoplasmic	443	491	0.87
Transmembrane Helix	492	513	0.89
Cytoplasmic	514	695	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGDAQGTPG ERQHAAATAV RRRPAPDGVP GSVLVPIGAL LLGLLLAALD QTIVSTALPT  60
   61 IVSDLGGLEH LSWVVTAYLL ASTAATPLWG KLGDQYGRKK LFQTAIVLFL IGSALCGMAR 120
  121 NMPELIAFRA VQGLGGGGLI VLSMAIVGDI VPPRERGKYQ GLFGAVFGAT SVLGPLLGGL 180
  181 FTEHLSWRWV FYVNLPVGVA ALAVIATALH IPKRSARHVI DYLGTFLIAS VATCLVLVAS 240
  241 LGGTTWGWSS PQIIGLAVLG VVLVAAFVAA ERRAAEPVLP LKLFRVRTFT LAAVISFIVG 300
  301 FAMFGAMTYL PTFLQVVQGV TPTMSGVHML PMVAGMLISS TASGQIVSRT GRWKVFPVTG 360
  361 TGVTALGLLL LHQLDEHSST GRMSVYFFVF GLGLGLVMQV LVLIVQNAVS YEDLGVATSG 420
  421 ATFFRSIGAS FGVAIFGSVF ASRLGDKLTA ALSGRPLPAG ITPDTLKSDP RGIANLPSSL 480
  481 RPSVLQAFAA SITDVFLYAA PVALLGFVLA WFLHEDRLRG SVTAPDVTET LASNPVERSS 540
  541 YDEVCRALSL LGSREGQSAI YEKITARAGY DLLPAASWLL LRIKKYGWAE PAQLAEDSSV 600
  601 PLTVVLDAAR QIEERHLVLR EGLDLVLTEG GREVAGKLSE ARAESLAELL GDWWGPDRPT 660
  661 DLTSLVEELN TELCGSDAER PRAEGTTSRP YGGPA