YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29608639, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHSTPSPHS TSTPSPHSTS TPPAYVPDLG KSPDPGPVSP RAGGPAPASR RLRDWLGAFV  60
   61 FTVPALILFG LLVLVPMGYA IYISFFDWGG FGSPTDVTGF GNYTRLLKDP VFLGDLWRGG 120
  121 LLIGFSVVLQ LPFALAMAVL LNQKLRGRAV YRMLFFAPYI LSEVITGVLF GMIFAPGEGL 180
  181 ADKVLGAVGL DGLGGDWFAG RNTVLPTLFL VMTWKYFGFH MMLHLAGLQG IPAELHEAGR 240
  241 IDGAGTWQRF RHITLPLLAP TLRISAFLSV VFSIQLFDLV WVITTGGPDH ASETMAISMV 300
  301 QYGFKRYQMG YASAISVVMF LISLVFALAY QRFVLRRDTE GAITTMRANR

Type	Start	End	Confidence
Cytoplasmic	1	57	0.98
Transmembrane Helix	58	82	0.92
Non-Cytoplasmic	83	119	0.96
Transmembrane Helix	120	141	0.94
Cytoplasmic	142	153	0.84
Transmembrane Helix	154	175	0.92
Non-Cytoplasmic	176	197	0.91
Transmembrane Helix	198	218	0.82
Cytoplasmic	219	258	0.87
Transmembrane Helix	259	277	0.88
Non-Cytoplasmic	278	308	0.87
Transmembrane Helix	309	330	0.92
Cytoplasmic	331	350	0.91