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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|29831372, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTTPSRGR RRAPSRMERA AGKAAALQKP RVILALLLLL GLTSVMLLDG YLRGEVFSDQ  60
   61 RVRDSAAYDK VPKKILEAGP IFTSSNGTVD PKSVPKKTIV LTFDDGPNPT YTEKVLKILQ 120
  121 DNDVPGTFFL VGSMVTRYPD AVKDMVDQGN EVGIHTFTHV DLSYQSTARV ERELNQTQLA 180
  181 LAGAAGITTT LFRAPYSAEA DAIDNYSWPV YQRMAKLGYT SVFIDTDSDD WKQPGVASII 240
  241 KTATPKKNNG ASVLFHDAGG DRDQTLVALP KYIKKMKAKG YTFTTVSGAL AKDRASTAAG 300
  301 RAGAGTGTGQ QPIDQTANGG AANGGTANGG TANGGTANGR QPGAAAGTGT ATGATATSIE 360
  361 QAAHRKATGA TLYEGKALVA AVALAEWSMP ALASGLVVVG VAVMGRFAMM LVLARTHYRQ 420
  421 RNKRRFSWGP EITRPVSVIV PAYNEKECIE NTINSLAQST HPIEIIVVDD GSTDGTADIV 480
  481 EAMRIPNVRV LRQENAGKPA ALNNGVRNAS YDIVVMMDGD TVFEADTVRR LVQPFADDEV 540
  541 GAVAGNAKVG NRDTVIGAWQ HIEYVMGFNL DRRMYDLLRC MPTIPGAIGA FRREAVLEVG 600
  601 GMSEDTLAED TDITIAMHRG GWRVVYEEHA RAWTEAPGSL KQLWSQRYRW SYGTMQALWK 660
  661 HRKSLTDRGP SGRFGRVGMP LVVIFQIVTP VFAPLIDVFT VYSMIFVDFW ASLLAWLAVL 720
  721 VVQLVCAAYA FRLDREKYRY LLMMPLQQLA YRQMMYLVLI HSCITALTGG RLRWQKLKRT 780
  781 GEVGTPAGVS 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle