YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29608316, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLALGPSW LDPNTLLDNF GIWGLLLIVF AESGLLIGFF LPGDSLLFTC GLLITAGTLD  60
   61 FPLWAAIALI CLAAILGDQA GYMFGKKVGP SLFNRPDSRL FKQENVVKAH DFFEKYGPKS 120
  121 LVLARFVPIV RTFTPIIAGV SGMKYRSFLV FNVIGGVLWG AGVTLLGSWL GNIEVVHKNI 180
  181 EAILILIVLV SVVPIAIEFL RARSKSKKNP PQDPTPARHP DQDRPAAPVM DDATRPLRVP 240
  241 PIQQGQDQAY GNQGQDQAYG NQGQDQAYGN GQSYGDQAQG YPQDYGQGQQ QYYPEEQYPQ 300
  301 QYPQQGYGQG QQYPGQGYGQ DQNYGQDQNH PYGQGYPQN

Type	Start	End	Confidence
Cytoplasmic	1	19	0.69
Transmembrane Helix	20	41	0.93
Non-Cytoplasmic	42	60	0.57
Transmembrane Helix	61	82	0.82
Cytoplasmic	83	147	0.72
Transmembrane Helix	148	170	0.92
Non-Cytoplasmic	171	179	0.79
Transmembrane Helix	180	200	0.93
Cytoplasmic	201	339	0.94