YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29606757, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMIRDLRAA VRPSRPSMRK DGSAYDTTRD PSTPSAVVDC AIYRDGARVA TDRPLTPHEA  60
   61 MRQVRRDGGF VWIGLHEPTE AEFAGIAGEF GLHPLAVEDA VQAHQRPKLE RYDDSLFTVF 120
  121 KTIHYVEHDQ LTANSEVVET GEVMCFTGRD FFITVRHGGQ GSLRALRHRL QDDPELLAKG 180
  181 PSAVLHAIAD HVVDGYIAVA DAVQDDIDEV ETEVFSPGRK GTPRGTDAGR IYQLKREVLE 240
  241 FKRAVSPLLR PMQLLSERPM RLIDPDIQKY FRDVADHLAR VQEQVLGFDE LLNSILQANL 300
  301 AQASVAQNED MRKITSWAAI IAVPTMVCGV YGMNFEHMPE LHWRFGYPVI MSVTVVLCLG 360
  361 IHRALKRNGW L

Type	Start	End	Confidence
Cytoplasmic	1	313	0.86
Transmembrane Helix	314	335	0.90
Non-Cytoplasmic	336	342	0.79
Transmembrane Helix	343	365	0.88
Cytoplasmic	366	371	0.86