YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29606732, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPPLVEPA AELTVDEVRR YSRHLIIPDV GMDGQKRLKN AKVLCVGAGG LGSPALMYLA  60
   61 AAGVGTLGIV EFDEVDESNL QRQIIHSQSD IGRSKAQSAK DSVLGINPYV NVILHEERLE 120
  121 AENVMDIFSQ YDLIVDGTDN FATRYLVNDA CVLLNKPYVW GSIYRFDGQA SVFWSEHGPC 180
  181 YRCLYPEPPP PGMVPSCAEG GVLGVLCASI GSIQVNEAIK LLAGIGEPLV GRLMIYDALE 240
  241 MQYRQVKVRK DPDCAVCGEN PTVTELIDYE AFCGVVSEEA QEAAAGSTIT PKQLKEWIDD 300
  301 GENIEIIDVR EINEYEIVSI PGAKLIPKNE FLMGTALEAL PQDKKIVLHC KTGVRSAEVL 360
  361 AVLKSAGFSD AVHVGGGVIG WVNQIEPNKP VY

Type	Start	End	Confidence
Cytoplasmic	1	42	0.66
Transmembrane Helix	43	62	0.62
Non-Cytoplasmic	63	392	0.97