YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29605896, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTTDTPPPV DRIEDRPRVT KTAAARKKEK SSEGGVLNVF SHGVLILWAI MVVLPLLWAV  60
   61 MTSFKDDDSI FSSPWSLPDK LHFENWSRAW SQAHMSDYFG NTLIVVGFSL VGTLVLGSMA 120
  121 AYVLARFDFP GNRFIYFLFV GGMSFPVMLA LVPLFYVLNN MRLLNTLPGL ILVYIAYSLP 180
  181 FTVFFLTSFF RTLPTSIAEA AFVDGASHTR TFFQIMLPMA KPGLISVGIF NFLGQWNQYM 240
  241 LPTVLNTDPD KKVLSQGLVE LATSQGYKGD WSGLFAGLVM AMLPVLAAYI IFQRQVVQGL 300
  301 TAGALK

Type	Start	End	Confidence
Cytoplasmic	1	35	0.98
Transmembrane Helix	36	59	0.88
Non-Cytoplasmic	60	102	0.93
Transmembrane Helix	103	124	0.94
Cytoplasmic	125	133	0.89
Transmembrane Helix	134	157	0.92
Non-Cytoplasmic	158	169	0.85
Transmembrane Helix	170	190	0.93
Cytoplasmic	191	210	0.90
Transmembrane Helix	211	233	0.85
Non-Cytoplasmic	234	270	0.93
Transmembrane Helix	271	292	0.92
Cytoplasmic	293	306	0.91