YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27363791, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNPLDKISL NNPWHLLATG FGSGLSPIIP GTMGTLASIP LFLVFAPLPL PVYLVIVLAA  60
   61 CLVGIKICQV TSDDMGVHDH GSIVWDEFAG FWITMTIMPA LQIPISELKW VGAGFVLFRF 120
  121 FDMVKPWPIG WLDKRVHGGL GIMLDDIVAG VMSAISLYVL GYFAGWL

Type	Start	End	Confidence
Cytoplasmic	1	13	0.73
Transmembrane Helix	14	39	0.79
Non-Cytoplasmic	40	44	0.49
Transmembrane Helix	45	68	0.81
Cytoplasmic	69	87	0.58
Transmembrane Helix	88	121	0.64
Non-Cytoplasmic	122	141	0.39
Transmembrane Helix	142	166	0.82
Cytoplasmic	167	167	0.43