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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|55276721
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.67
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSSIPLSR ALTLSGRRSH HSLHKKGSSL ALSQSSFLSC PPPSSSHGPR MPTPTTARRR  60
   61 PPPACCCCLV LLVLLLPACR AFPLCTDSRA PLPPNGTLAF CGDSAACCDA DDDKALRDQH 120
  121 QAANVSDAAC AAVLKAILCA KCNPYSAELF DAGPKIRTIP FLCSSASSSA TSAHQSKKST 180
  181 AVQDYCKLVW DTCKDATIHN SPFQPPLQGG GRLPSSSSKL TDAWQSESDF CTSFGGDRSV 240
  241 CLSGSTVSFN ATHPSASPKG VCLERIDNGS YAYLNMVPHP DGSNRVFLGT QAGKILLATV 300
  301 PEQGSGGTLQ FDEAGQFVDL TDQVHFDSTF GLMGMAFHPD FATNGRFFAS YNCDRTKSPS 360
  361 CSGRCSCNSD VGCDPSKLGT DNGAQPCQYQ VVVSEYSAKG LSSNVSEVTS AEPTEVKRIF 420
  421 TMGLPYTSNH GGQILFGPTD GYLYLMMGDG GQKGDPFNFA QNKKSLLGKI MRLDIDSTPG 480
  481 PSKVANQSLW GNYSIPKDNP FSDDSGLAPE IWALGVRNPW RCSFDLERPS YFYCADTGQD 540
  541 QYEEVDLISK AGNYGWRMYE GPLVYHPPWT PGGNTSLKSV NVIPPIMGYS HSDVNKDIGS 600
  601 ASIMGGYVYR GSTDPCLYGR YLYADLYASA MWTGTETPES SGNYTSSLIS FSCSKNSPIP 660
  661 CDSAAGSPLP SLGYIYSFGE DNNKDIYVLA SKGVYRVVRP SLCGYTCPTE KPETNNGKAP 720
  721 AGPSSNAPAA MGLGMKMAAL LLSAATSFVL MR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle