YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55379755, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKKSPLNR LRRSLGLETQ NEWPSVARER LLAYGLLAVY VLIIWFPIYY IFITSIKPSS  60
   61 EVLSLPITFL PQSPTAQNYV DIFTNRPFDN YTINSMIVAT TTTLICITLG TVTGYSFSRY 120
  121 DFLGNKSLLL SIVGARMIPP IALIVPFFQI MSNPPLIGGL TGSLYDTRLA LILTYTFFNL 180
  181 PFAVWIMKNY FDGIPESLDE QARIDGCSRW EAFVKIILPM AKPGIAATAI LAFIFSWNEF 240
  241 VFALVLTSSE QAQTLPIAVS LFVADDFVDW AHLAAGGMIA ALPGILFGLF FQQYIVSGLT 300
  301 QGAVKE

Type	Start	End	Confidence
Cytoplasmic	1	30	0.98
Transmembrane Helix	31	53	0.91
Non-Cytoplasmic	54	95	0.94
Transmembrane Helix	96	117	0.92
Cytoplasmic	118	127	0.88
Transmembrane Helix	128	150	0.88
Non-Cytoplasmic	151	168	0.82
Transmembrane Helix	169	187	0.91
Cytoplasmic	188	217	0.87
Transmembrane Helix	218	237	0.83
Non-Cytoplasmic	238	269	0.85
Transmembrane Helix	270	291	0.92
Cytoplasmic	292	306	0.84